2EJ4 Gene Regulation date Mar 14, 2007
title Functional And Structural Basis Of Nuclear Localization Signal In Zic3 Zinc Finger Domain: A Role Of Conserved Tryptophan Residue In The Zinc Finger Domain
authors T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger Protein Zic 3
Chain: A
Fragment: Zic3_c2h2-12 Domain, Unp Residues 245-326
Synonym: Zinc Finger Protein Of The Cerebellum 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zic3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050815-02
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (491 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2EJ4
  • CSU: Contacts of Structural Units for 2EJ4
  • Original NMR restraints for 2EJ4 from PDB
  • Retrieve 2EJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EJ4 from S2C, [Save to disk]
  • View 2EJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EJ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2EJ4, from MSDmotif at EBI
  • Fold representative 2ej4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ej4_A] [2ej4]
  • SWISS-PROT database: [O60481]
  • Domain organization of [ZIC3_HUMAN] by SWISSPFAM
  • Domain found in 2EJ4: [ZnF_C2H2 ] by SMART
  • Alignments of the sequence of 2EJ4 with the sequences similar proteins can be viewed for 2EJ4's classification [ZIC3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ZIC3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2EJ4
  • Community annotation for 2EJ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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