2EJS	Ligase	date	Mar 20, 2007
title	Solution Structure Of Ruh-076, A Human Cue Domain
authors	A.Z.M.Ruhul Momen, S.Kitasaka, H.Hirota, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Autocrine Motility Factor Receptor, Isoform 2 Chain: A Fragment: Cue Domain Synonym: Amf Receptor, Gp78 Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system_vector_type: Plasmid Expression_system_plasmid: P060904-10 Other_details: Cell-Free Protein Synthesis
method	Solution NMR
ligand		enzyme	Ligase E.C.6.3.2 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk] CSU: Contacts of Structural Units for 2EJS Original NMR restraints for 2EJS from PDB Retrieve 2EJS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2EJS from S2C, [Save to disk]

View 2EJS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2EJS

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2EJS, from MSDmotif at EBI Fold representative 2ejs from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ejs_A] SWISS-PROT database: [Q9UKV5] Domain organization of [AMFR2_HUMAN] by SWISSPFAM Domain found in 2EJS: [CUE ] by SMART Alignments of the sequence of 2EJS with the sequences similar proteins can be viewed for 2EJS's classification [AMFR2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AMFR2_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2EJS

Community annotation for 2EJS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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