2EK6 Rna Binding Protein date Mar 22, 2007
title Crystal Structure Of Human Rna-Binding Protein 12
authors P.H.Rehse, N.Nakano, S.Yokoyama, Riken Structural Genomicsprot Initiative (Rsgi)
compound source
Molecule: Rna-Binding Protein 12
Chain: A, B, C, D
Fragment: Rrm Domain, Residues In Database 848-929
Synonym: Rna-Binding Motif Protein 12, Sh3ww Domain Anchor In The Nucleus, Swan;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pxd41122-21
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: P 6
R_factor 0.167 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.020 107.020 58.890 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.38 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2ek6.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2ek6.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2EK6
  • Likely Quarternary Molecular Structure file(s) for 2EK6
  • Structure Factors (591 Kb)
  • Retrieve 2EK6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EK6 from S2C, [Save to disk]
  • Re-refined 2ek6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EK6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EK6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EK6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ek6_A] [2ek6_D] [2ek6_C] [2ek6_B] [2ek6]
  • SWISS-PROT database: [Q9NTZ6]
  • Domain organization of [RBM12_HUMAN] by SWISSPFAM
  • Domain found in 2EK6: [RRM ] by SMART
  • Other resources with information on 2EK6
  • Community annotation for 2EK6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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