2EL0 Transferase date Mar 26, 2007
title Structural Study Of Project Id Ph0725 From Pyrococcus Horiko (L21m)
authors Y.Asada, Y.Matsuura, N.Ono, H.Shimada, N.Kunishima, Riken Structu Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Diphthine Synthase
Chain: A, B
Synonym: Diphthamide Biosynthesis Methyltransferase
Ec: 2.1.1.98
Engineered: Yes
Mutation: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 41 21 2
R_factor 0.187 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.559 105.559 137.448 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand SAH enzyme Transferase E.C.2.1.1.98 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2el0.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 2EL0
  • CSU: Contacts of Structural Units for 2EL0
  • Likely Quarternary Molecular Structure file(s) for 2EL0
  • Structure Factors (260 Kb)
  • Retrieve 2EL0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EL0 from S2C, [Save to disk]
  • Re-refined 2el0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EL0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EL0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EL0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2el0] [2el0_B] [2el0_A]
  • SWISS-PROT database: [O58456]
  • Domain organization of [DPHB_PYRHO] by SWISSPFAM
  • Other resources with information on 2EL0
  • Community annotation for 2EL0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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