2EMP Transcription date Mar 28, 2007
title Solution Structure Of The C2h2 Type Zinc Finger (Region 536- 568) Of Human Zinc Finger Protein 347
authors T.Tomizawa, N.Tochio, H.Abe, K.Saito, H.Li, M.Sato, S.Koshiba, N.Kobayashi, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger Protein 347
Chain: A
Fragment: Zf-C2h2 Domain
Synonym: Zinc Finger Protein 1111
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Znf347
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P070115-56
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2EMP
  • CSU: Contacts of Structural Units for 2EMP
  • Original NMR restraints for 2EMP from PDB
  • Retrieve 2EMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EMP from S2C, [Save to disk]
  • View 2EMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2EMP, from MSDmotif at EBI
  • Fold representative 2emp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2emp] [2emp_A]
  • SWISS-PROT database: [Q96SE7]
  • Domain organization of [ZN347_HUMAN] by SWISSPFAM
  • Domain found in 2EMP: [ZnF_C2H2 ] by SMART
  • Alignments of the sequence of 2EMP with the sequences similar proteins can be viewed for 2EMP's classification [ZN347_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ZN347_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2EMP
  • Community annotation for 2EMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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