2EPA Transcription date Mar 29, 2007
title Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10
authors K.Izumi, F.Hayashi, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Krueppel-Like Factor 10
Chain: A
Fragment: Zf-C2h2, Unp Residues 359-423
Synonym: Transforming Growth Factor-Beta-Inducible Early Growth Response Protein 1, Tgfb-Inducible Early Growth Response Protein 1, Tieg-1, Egr-Alpha;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klf10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060925-12
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2EPA
  • CSU: Contacts of Structural Units for 2EPA
  • Retrieve 2EPA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EPA from S2C, [Save to disk]
  • View 2EPA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EPA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2EPA, from MSDmotif at EBI
  • Fold representative 2epa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2epa_A] [2epa]
  • SWISS-PROT database: [Q13118]
  • Domain organization of [KLF10_HUMAN] by SWISSPFAM
  • Domain found in 2EPA: [ZnF_C2H2 ] by SMART
  • Other resources with information on 2EPA
  • Community annotation for 2EPA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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