2EPI Structural Genomics, Unknown Function date Mar 30, 2007
title Crystal Structure Pf Hypothetical Protein Mj1052 From Methanocaldococcus Jannascii (Form 2)
authors H.Mizutani, N.Kunishima, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Upf0045 Protein Mj1052
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 243232
Strain: Dsm 2661
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.780 75.747 54.991 90.00 117.28 90.00
method X-Ray Diffractionresolution 1.70 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2epi.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 2EPI
  • Likely Quarternary Molecular Structure file(s) for 2EPI
  • Structure Factors (314 Kb)
  • Retrieve 2EPI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EPI from S2C, [Save to disk]
  • Re-refined 2epi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2EPI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EPI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EPI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2epi] [2epi_B] [2epi_A] [2epi_D] [2epi_C]
  • SWISS-PROT database: [Q58452]
  • Domain organization of [Y1052_METJA] by SWISSPFAM
    • Other resources with information on 2EPI
  • Community annotation for 2EPI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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