2EPP Transcription date Mar 30, 2007
title Solution Structure Of The First C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 278
authors W.Tanabe, S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Poz-, At Hook-, And Zinc Finger-Containing Protein 1;
Chain: A
Fragment: Zinc Finger Domain
Synonym: Zinc Finger Protein 278, Zinc Finger Sarcoma Gene Protein, Btb-Poz Domain Zinc Finger Transcription Factor, Protein Kinase A Ri-Subunit Alpha- Associated Protein, Zinc Finger And Btb Domain-Containing Protein 19;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Patz1, Patz, Riaz, Zbtb19, Znf278, Zsg
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061204-01
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2EPP
  • CSU: Contacts of Structural Units for 2EPP
  • Retrieve 2EPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EPP from S2C, [Save to disk]
    • View 2EPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EPP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2EPP, from MSDmotif at EBI
  • Fold representative 2epp from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2epp_A] [2epp]
  • SWISS-PROT database: [Q9HBE1]
  • Domain organization of [PATZ1_HUMAN] by SWISSPFAM
  • Domain found in 2EPP: [ZnF_C2H2 ] by SMART
    • Other resources with information on 2EPP
  • Community annotation for 2EPP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science