2EPR Transcription date Mar 30, 2007
title Solution Structure Of The Secound Zinc Finger Domain Of Zinc Finger Protein 278
authors W.Tanabe, S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Poz-, At Hook-, And Zinc Finger-Containing Protein 1;
Chain: A
Fragment: Zinc Finger Domain, Unp Residues 350-384
Synonym: Zinc Finger Protein 278, Zinc Finger Sarcoma Gene Protein, Btb-Poz Domain Zinc Finger Transcription Factor, Protein Kinase A Ri-Subunit Alpha- Associated Protein, Zinc Finger And Btb Domain-Containing Protein 19;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Patz1, Patz, Riaz, Zbtb19, Znf278, Zsg
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061204-08
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2EPR
  • CSU: Contacts of Structural Units for 2EPR
  • Retrieve 2EPR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EPR from S2C, [Save to disk]
  • View 2EPR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EPR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2EPR, from MSDmotif at EBI
  • Fold representative 2epr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2epr_A] [2epr]
  • SWISS-PROT database: [Q9HBE1]
  • Domain organization of [PATZ1_HUMAN] by SWISSPFAM
  • Domain found in 2EPR: [ZnF_C2H2 ] by SMART
  • Other resources with information on 2EPR
  • Community annotation for 2EPR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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