2ERH Hydrolase Hydrolase Inhibitor date Oct 24, 2005
title Crystal Structure Of The E7_gim7_g Complex; A Designed Inte Between The Colicin E7 Dnase And The Im7 Immunity Protein
authors L.A.Joachimiak, T.Kortemme, B.L.Stoddard, D.Baker
compound source
Molecule: Colicin E7 Immunity Protein
Chain: A
Synonym: Imme7, Microcin E7 Immunity Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Imm, Ceie7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30

Molecule: Colicin E7
Chain: B
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Cole7, Cea
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: I 2 2 2
R_factor 0.228 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.038 72.969 121.167 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceComputational Design of a New Hydrogen Bond Network and at Least a 300-fold Specificity Switch at a Protein-Protein Interface., Joachimiak LA, Kortemme T, Stoddard BL, Baker D, J Mol Biol. 2006 Aug 4;361(1):195-208. Epub 2006 May 24. PMID:16831445
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2erh.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 2ERH
  • Likely Quarternary Molecular Structure file(s) for 2ERH
  • Structure Factors (172 Kb)
  • Retrieve 2ERH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ERH from S2C, [Save to disk]
  • Re-refined 2erh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ERH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ERH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ERH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2erh] [2erh_B] [2erh_A]
  • SWISS-PROT database: [Q47112] [Q03708]
  • Belongs to the colicin immunity protein (colip) functional family according to TCDB.
  • Domain organization of [CEA7_ECOLX] [IMM7_ECOLX] by SWISSPFAM
  • Domain found in 2ERH: [HNHc ] by SMART
  • Other resources with information on 2ERH
  • Community annotation for 2ERH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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