2ETL Hydrolase, Ligase date Oct 27, 2005
title Crystal Structure Of Ubiquitin Carboxy-Terminal Hydrolase L1
authors C.Das, Q.Q.Hoang, C.A.Kreinbring, S.J.Luchansky, R.K.Meray, S.S.R P.T.Lansbury, D.Ringe, G.A.Petsko
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase Isozyme L1
Chain: A, B
Synonym: Uch-L1, Ubiquitin Thiolesterase L1, Neuron Cytopla Protein 9.5, Pgp 9.5, Pgp9.5;
Ec: 3.4.19.12, 6.-.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uchl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: P 4 21 2
R_factor 0.223 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.097 110.097 79.489 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1., Das C, Hoang QQ, Kreinbring CA, Luchansky SJ, Meray RK, Ray SS, Lansbury PT, Ringe D, Petsko GA, Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4675-80. Epub 2006 Mar 13. PMID:16537382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2etl.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (2etl.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (2etl.pdb3.gz) 144 Kb
  • Biological Unit Coordinates (2etl.pdb4.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 2ETL
  • CSU: Contacts of Structural Units for 2ETL
  • Likely Quarternary Molecular Structure file(s) for 2ETL
  • Structure Factors (412 Kb)
  • Retrieve 2ETL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ETL from S2C, [Save to disk]
  • Re-refined 2etl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ETL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ETL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ETL, from MSDmotif at EBI
  • Fold representative 2etl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2etl_A] [2etl] [2etl_B]
  • SWISS-PROT database: [P09936]
  • Domain organization of [UCHL1_HUMAN] by SWISSPFAM
  • Other resources with information on 2ETL
  • Community annotation for 2ETL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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