2EUV	Cell Cycle Dna	date	Oct 30, 2005
title	Principles Of Protein-Dna Recognition Revealed In The Struct Analysis Of Ndt80-Mse Dna Complexes
authors	J.S.Lamoureux, J.N.Glover
compound		source
Molecule: 5'-D(Tpgpcpapapcpapcpapapaptpapc)-3 Chain: B Engineered: Yes Mutation: Yes Other_details: Vg1c Mse Dna Strand 1		Synthetic: Yes
Molecule: 5'-D(Apgptpaptptptpgptpgptptpgpc)-3 Chain: C Engineered: Yes Other_details: Vg1c Mse Dna Strand 2		Synthetic: Yes
Molecule: Ndt80 Protein Chain: A Fragment: Ndt80 Dna-Binding Domain Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Ndt80 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p1
symmetry	Space Group: C 2 2 21	R_factor 0.193 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.226 79.248 160.881 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.94 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes., Lamoureux JS, Glover JN, Structure. 2006 Mar;14(3):555-65. PMID:16531239

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (2euv.pdb1.gz) 63 Kb CSU: Contacts of Structural Units for 2EUV Likely Quarternary Molecular Structure file(s) for 2EUV Structure Factors (243 Kb) Retrieve 2EUV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2EUV from S2C, [Save to disk] Re-refined 2euv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2EUV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2EUV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2EUV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2euv_A] [2euv] [2euv_C] [2euv_B] SWISS-PROT database: [P38830] Domain organization of [NDT80_YEAST] by SWISSPFAM

Other resources with information on 2EUV

Community annotation for 2EUV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---