2F0X Hydrolase date Nov 14, 2005
title Crystal Structure And Function Of Human Thioesterase Superfa Member 2(Them2)
authors Z.Cheng, F.Song, X.Shan, Y.Wang, Z.Wei, W.Gong
compound source
Molecule: Thioesterase Superfamily Member 2
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: C 1 2 1
R_factor 0.216 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.937 122.076 90.977 90.00 123.90 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structure of human thioesterase superfamily member 2., Cheng Z, Song F, Shan X, Wei Z, Wang Y, Dunaway-Mariano D, Gong W, Biochem Biophys Res Commun. 2006 Oct 13;349(1):172-7. Epub 2006 Aug 14. PMID:16934754
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (2f0x.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (2f0x.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2F0X
  • CSU: Contacts of Structural Units for 2F0X
  • Likely Quarternary Molecular Structure file(s) for 2F0X
  • Structure Factors (1176 Kb)
  • Retrieve 2F0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F0X from S2C, [Save to disk]
  • Re-refined 2f0x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F0X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F0X, from MSDmotif at EBI
  • Fold representative 2f0x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f0x_D] [2f0x_E] [2f0x_H] [2f0x_G] [2f0x_F] [2f0x_C] [2f0x_B] [2f0x] [2f0x_A]
  • SWISS-PROT database: [Q9NPJ3]
  • Domain organization of [ACO13_HUMAN] by SWISSPFAM
  • Other resources with information on 2F0X
  • Community annotation for 2F0X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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