2F0Z Hydrolase date Nov 14, 2005
title Crystal Structure Of The Human Sialidase Neu2 In Complex Wit Zanamivir Inhibitor
authors L.M.G.Chavas, R.Kato, J.Mckimm-Breschkin, P.M.Colman, P.Fusi, C.T B.Venerando, G.Tettamanti, E.Monti, S.Wakatsuki
compound source
Molecule: Sialidase 2
Chain: A
Synonym: Neu2, Cytosolic Sialidase, N-Acetyl-Alpha- Neurami
Ec: 3.2.1.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: C 2 2 21
R_factor 0.192 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.510 85.680 92.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ZMR BindingDB enzyme Hydrolase E.C.3.2.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2f0z.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2F0Z
  • CSU: Contacts of Structural Units for 2F0Z
  • Likely Quarternary Molecular Structure file(s) for 2F0Z
  • Structure Factors (162 Kb)
  • Retrieve 2F0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F0Z from S2C, [Save to disk]
  • Re-refined 2f0z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F0Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F0Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f0z_A] [2f0z]
  • SWISS-PROT database: [Q9Y3R4]
  • Domain organization of [NEUR2_HUMAN] by SWISSPFAM
  • Other resources with information on 2F0Z
  • Community annotation for 2F0Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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