2F2S Transferase date Nov 17, 2005
title Human Mitochondrial Acetoacetyl-Coa Thiolase
authors J.R.Min, L.Dombrovski, T.Antoshenko, H.Wu, P.Loppnau, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Structural Genomics Consortium (Sgc)
compound source
Molecule: Acetyl-Coa Acetyltransferase, Mitochondrial
Chain: A, B, C, D
Synonym: Acetoacetyl-Coa Thiolase, T2
Ec: 2.3.1.9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acat1, Acat, Mat
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.989 126.640 111.858 90.00 98.64 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, COA, SCY enzyme Transferase E.C.2.3.1.9 BRENDA
note 2F2S supersedes 2ES8
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk]
  • Biological Unit Coordinates (2f2s.pdb1.gz) 242 Kb
  • Biological Unit Coordinates (2f2s.pdb2.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 2F2S
  • CSU: Contacts of Structural Units for 2F2S
  • Likely Quarternary Molecular Structure file(s) for 2F2S
  • Structure Factors (796 Kb)
  • Retrieve 2F2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F2S from S2C, [Save to disk]
  • Re-refined 2f2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F2S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F2S, from MSDmotif at EBI
  • Fold representative 2f2s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f2s_C] [2f2s] [2f2s_B] [2f2s_A] [2f2s_D]
  • SWISS-PROT database: [P24752]
  • Domain organization of [THIL_HUMAN] by SWISSPFAM
  • Other resources with information on 2F2S
  • Community annotation for 2F2S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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