2F37 Membrane Protein date Nov 18, 2005
title Crystal Structure Of The Ankyrin Repeat Domain Of Human Trpv2
authors C.J.Mccleverty
compound source
Molecule: Transient Receptor Potential Cation Channel Subfamily V Member 2;
Chain: A, B
Fragment: Ankyrin Repeat Domain (Residues 69-319)
Synonym: Trpv2, Osm-9-Like Trp Channel 2, Otrpc2, Vanilloid Receptor-Like Protein 1, Vrl-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trpv2, Vrl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl41
symmetry Space Group: P 61 2 2
R_factor 0.207 R_Free 0.229
length a length b length c angle alpha angle beta angle gamma
93.657 93.657 265.855 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand MSE, SO4 enzyme
A, B

Primary referenceCrystal structure of the human TRPV2 channel ankyrin repeat domain., McCleverty CJ, Koesema E, Patapoutian A, Lesley SA, Kreusch A, Protein Sci. 2006 Sep;15(9):2201-6. Epub 2006 Aug 1. PMID:16882997
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2f37.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2f37.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2F37
  • CSU: Contacts of Structural Units for 2F37
  • Likely Quarternary Molecular Structure file(s) for 2F37
  • Structure Factors (596 Kb)
  • Retrieve 2F37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F37 from S2C, [Save to disk]
  • Re-refined 2f37 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F37
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F37, from MSDmotif at EBI
  • Fold representative 2f37 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f37_A] [2f37_B] [2f37]
  • SWISS-PROT database: [Q9Y5S1]
  • Belongs to the transient receptor potential ca(2+) channel (trp-cc) family according to TCDB.
  • Domain organization of [TRPV2_HUMAN] by SWISSPFAM
  • Domain found in 2F37: [ANK ] by SMART
  • Other resources with information on 2F37
  • Community annotation for 2F37 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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