2F4U Rna date Nov 24, 2005
title Asite Rna + Designer Antibiotic
authors J.B.Murray, S.O.Meroueh, R.J.Russell, G.Lentzen, J.Haddad, S.Moba
compound source
Molecule: 5'-R(Gpcpgpupcpapcpapcpcpgpgpupgpa Cpgpc)-3';
Chain: A, B
Engineered: Yes
Other_details: A-Site Rna
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.250 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.100 46.460 89.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand AB6 enzyme
Primary referenceInteractions of designer antibiotics and the bacterial ribosomal aminoacyl-tRNA site., Murray JB, Meroueh SO, Russell RJ, Lentzen G, Haddad J, Mobashery S, Chem Biol. 2006 Feb;13(2):129-38. PMID:16492561
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (2f4u.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2F4U
  • CSU: Contacts of Structural Units for 2F4U
  • Likely Quarternary Molecular Structure file(s) for 2F4U
  • Retrieve 2F4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F4U from S2C, [Save to disk]
    • View 2F4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2F4U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F4U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f4u_A] [2f4u_B] [2f4u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2F4U
  • Community annotation for 2F4U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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