2F5Q	Hydrolase Dna	date	Nov 26, 2005
title	Catalytically Inactive (E3q) Mutm Crosslinked To Oxog:C Cont Cc2
authors	A.Banerjee, W.L.Santos, G.L.Verdine
compound		source
Molecule: 5'-D(Apgpgtpapgpapcpcptpgpgpapcpgp Chain: B Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna
Molecule: 5'-D(Tpgpcpgtpcpcpap(8og)Pgptpcptpa 3'; Chain: C Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna Containing A Backbone Modifica
Molecule: Formamidopyrimidine-Dna Glycosidase Chain: A Synonym: Mutm Ec: 3.2.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl-21 Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24b
symmetry	Space Group: P 21 21 21	R_factor 0.213 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.413 92.000 103.050 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	8OG, ZN	enzyme	Hydrolase E.C.3.2.2.23 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of a DNA glycosylase searching for lesions., Banerjee A, Santos WL, Verdine GL, Science. 2006 Feb 24;311(5764):1153-7. PMID:16497933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (2f5q.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 2F5Q CSU: Contacts of Structural Units for 2F5Q Likely Quarternary Molecular Structure file(s) for 2F5Q Structure Factors (140 Kb) Retrieve 2F5Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F5Q from S2C, [Save to disk] Re-refined 2f5q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F5Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F5Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F5Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f5q] [2f5q_C] [2f5q_B] [2f5q_A] SWISS-PROT database: [P84131] Domain organization of [P84131_BACST] by SWISSPFAM Domains found in 2F5Q: [Fapy_DNA_glyco] [H2TH ] by SMART

Other resources with information on 2F5Q

Community annotation for 2F5Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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