2F5Z	Oxidoreductase Protein Binding	date	Nov 28, 2005
title	Crystal Structure Of Human Dihydrolipoamide Dehydrogenase (E Complexed To The E3-Binding Domain Of Human E3-Binding Prot
authors	C.A.Brautigam, J.L.Chuang, R.M.Wynn, D.R.Tomchick, M.Machius, D.T
compound		source
Molecule: Dihydrolipoyl Dehydrogenase Chain: A, B, C, D, E, F, G, H, I, J Fragment: Dihydrolipoyl Dehydrogenase, Residues 36-509 Synonym: Dihydrolipoamide Dehydrogenase, Glycine Cleavage S Protein; Ec: 1.8.1.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dld, Gcsl, Lad, Phe3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl-1 Blue Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptrchisthe3
Molecule: Pyruvate Dehydrogenase Protein X Component Chain: K, L, M, N, O Fragment: E3-Binding Domain, Residues 173-230 Synonym: Dihydrolipoamide Dehydrogenase-Binding Protein Of Dehydrogenase Complex, Lipoyl-Containing Pyruvate Dehydroge Complex Component X, E3-Binding Protein, E3bp, Prox; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdhx, Pdx1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl-21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-Lte3bd
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 171.153 187.728 224.392 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.18 Å
ligand	FAD, SO4	enzyme	Oxidoreductase E.C.1.8.1.4 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G pyruvate dehydrogenase (NAD+... O, N, K, M, L
Primary reference	Structural Insight into Interactions between Dihydrolipoamide Dehydrogenase (E3) and E3 Binding Protein of Human Pyruvate Dehydrogenase Complex., Brautigam CA, Wynn RM, Chuang JL, Machius M, Tomchick DR, Chuang DT, Structure. 2006 Mar;14(3):611-21. Epub 2006 Jan 26. PMID:16442803

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (807 Kb) [Save to disk] Biological Unit Coordinates (2f5z.pdb1.gz) 163 Kb Biological Unit Coordinates (2f5z.pdb2.gz) 171 Kb Biological Unit Coordinates (2f5z.pdb3.gz) 170 Kb Biological Unit Coordinates (2f5z.pdb4.gz) 173 Kb Biological Unit Coordinates (2f5z.pdb5.gz) 167 Kb LPC: Ligand-Protein Contacts for 2F5Z CSU: Contacts of Structural Units for 2F5Z Likely Quarternary Molecular Structure file(s) for 2F5Z Structure Factors (3210 Kb) Retrieve 2F5Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F5Z from S2C, [Save to disk] Re-refined 2f5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F5Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F5Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F5Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f5z_D] [2f5z_E] [2f5z_F] [2f5z_B] [2f5z_K] [2f5z_H] [2f5z_L] [2f5z_A] [2f5z_C] [2f5z_J] [2f5z] [2f5z_N] [2f5z_M] [2f5z_O] [2f5z_I] [2f5z_G] SWISS-PROT database: [P09622] [O00330] Domain organization of [DLDH_HUMAN] [ODPX_HUMAN] by SWISSPFAM

Other resources with information on 2F5Z

Community annotation for 2F5Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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