2F60	Protein Binding	date	Nov 28, 2005
title	Crystal Structure Of The Dihydrolipoamide Dehydrogenase (E3) Domain Of Human E3-Binding Protein
authors	C.A.Brautigam, J.L.Chuang, R.M.Wynn, D.R.Tomchick, M.Machius, D.T
compound		source
Molecule: Pyruvate Dehydrogenase Protein X Component Chain: K Fragment: E3-Binding Domain, Residues 173-230 Synonym: Dihydrolipoamide Dehydrogenase-Binding Protein Of Dehydrogenase Complex, Lipoyl-Containing Pyruvate Dehydroge Complex Component X, E3-Binding Protein, E3bp, Prox; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdhx, Pdx1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-Lte3bd
symmetry	Space Group: P 65 2 2	R_factor 0.206 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.845 36.845 191.542 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component K
Primary reference	Structural Insight into Interactions between Dihydrolipoamide Dehydrogenase (E3) and E3 Binding Protein of Human Pyruvate Dehydrogenase Complex., Brautigam CA, Wynn RM, Chuang JL, Machius M, Tomchick DR, Chuang DT, Structure. 2006 Mar;14(3):611-21. Epub 2006 Jan 26. PMID:16442803

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk] Biological Unit Coordinates (2f60.pdb1.gz) 12 Kb LPC: Ligand-Protein Contacts for 2F60 CSU: Contacts of Structural Units for 2F60 Likely Quarternary Molecular Structure file(s) for 2F60 Structure Factors (85 Kb) Retrieve 2F60 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F60 from S2C, [Save to disk] Re-refined 2f60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F60 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F60

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F60, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f60] [2f60_K] SWISS-PROT database: [O00330] Domain organization of [ODPX_HUMAN] by SWISSPFAM

Other resources with information on 2F60

Community annotation for 2F60 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---