2F61 Hydrolase date Nov 28, 2005
title Crystal Structure Of Partially Deglycosylated Acid Beta-Gluc
authors R.S.Hegde, G.Grabowski
compound source
Molecule: Acid Beta-Glucosidase
Chain: A, B
Synonym: Beta-Glucocerebrosidase, Glucosylceramidase, D-Glu Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase;
Ec: 3.2.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gba, Gc
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho
Expression_system_cell: Ovary
symmetry Space Group: C 2 2 21
R_factor 0.196 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.640 284.430 91.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NAG, NDG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceAnalyses of variant acid beta-glucosidases: effects of Gaucher disease mutations., Liou B, Kazimierczuk A, Zhang M, Scott CR, Hegde RS, Grabowski GA, J Biol Chem. 2006 Feb 17;281(7):4242-53. Epub 2005 Nov 17. PMID:16293621
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (2f61.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (2f61.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 2F61
  • CSU: Contacts of Structural Units for 2F61
  • Likely Quarternary Molecular Structure file(s) for 2F61
  • Structure Factors (636 Kb)
  • Retrieve 2F61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F61 from S2C, [Save to disk]
  • Re-refined 2f61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F61
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F61, from MSDmotif at EBI
  • Fold representative 2f61 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f61_B] [2f61_A] [2f61]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2F61 with the sequences similar proteins can be viewed for 2F61's classification [GLCM_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GLCM_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2F61
  • Community annotation for 2F61 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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