2F69 Transferase date Nov 28, 2005
title Ternary Complex Of Set79 Bound To Adohcy And A Taf10 Peptid
authors J.F.Couture, E.Collazo, G.Hauk, R.C.Trievel
compound source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-4 S Set7;
Chain: A
Synonym: Histone H3-K4 Methyltransferase, H3-K4-Hmtase, Set Containing Protein 7, Set9, Set79;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Set7, Kiaa1717
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis2

Molecule: Taf10 Peptide, Acetyl-Ser-Lys-Ser-Mlz-Asp-Arg-Lys Leu;
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Human Taf10 Peptide
symmetry Space Group: P 32 2 1
R_factor 0.149 R_Free 0.174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.380 83.380 95.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand ACE, MLZ, SAH enzyme Transferase E.C.2.1.1.43 BRENDA
note 2F69 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the methylation site specificity of SET7/9., Couture JF, Collazo E, Hauk G, Trievel RC, Nat Struct Mol Biol. 2006 Feb;13(2):140-6. Epub 2006 Jan 15. PMID:16415881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (2f69.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 2F69
  • CSU: Contacts of Structural Units for 2F69
  • Likely Quarternary Molecular Structure file(s) for 2F69
  • Structure Factors (1166 Kb)
  • Retrieve 2F69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F69 from S2C, [Save to disk]
  • Re-refined 2f69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F69
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F69, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f69] [2f69_A] [2f69_B]
  • SWISS-PROT database: [Q8WTS6]
  • Domain organization of [SETD7_HUMAN] by SWISSPFAM
  • Domain found in 2F69: [SET ] by SMART
  • Other resources with information on 2F69
  • Community annotation for 2F69 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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