2F8X Transcription Dna date Dec 04, 2005
title Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence
authors Y.Nam, P.Sliz, S.C.Blacklow
compound source
Molecule: 5'- D(Gptptpapcptpgptpgpgpgpapapapgpapapa)- 3';
Chain: X
Engineered: Yes
Synthetic: Yes

Molecule: 5'- D(Tptptpcptptptpcpcpcpapcpapgptpapapc)- 3';
Chain: Y
Engineered: Yes

Synthetic: Yes

Molecule: Recombining Binding Protein Suppressor Of Hairless, Isoform 4;
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_plasmid: Prseta

Molecule: Neurogenic Locus Notch Homolog Protein 1
Chain: K
Fragment: [Contains: Notch 1 Extracellular Truncation Notch 1 Intracellular Domain];
Synonym: (Notch 1) (Hn1) (Translocation-Associated Notch Protein Tan-1);
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch1, Tan1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_plasmid: Pet28a

Molecule: Mastermind-Like Protein 1
Chain: M
Synonym: Mam-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Maml1, Kiaa0200
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_plasmid: Pdest15
symmetry Space Group: P 63 2 2
R_factor 0.222 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
273.866 273.866 121.016 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.25 Å
note 2F8X is a representative structure
Primary referenceStructural basis for cooperativity in recruitment of MAML coactivators to Notch transcription complexes., Nam Y, Sliz P, Song L, Aster JC, Blacklow SC, Cell. 2006 Mar 10;124(5):973-83. PMID:16530044
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2f8x.pdb1.gz) 125 Kb
  • CSU: Contacts of Structural Units for 2F8X
  • Likely Quarternary Molecular Structure file(s) for 2F8X
  • Structure Factors (637 Kb)
  • Retrieve 2F8X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F8X from S2C, [Save to disk]
  • Re-refined 2f8x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F8X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F8X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2F8X, from MSDmotif at EBI
  • Fold representative 2f8x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f8x_X] [2f8x_M] [2f8x_C] [2f8x] [2f8x_Y] [2f8x_K]
  • SWISS-PROT database: [Q92585] [P46531] [Q06330]
  • Domain organization of [MAML1_HUMAN] [NOTC1_HUMAN] [SUH_HUMAN] by SWISSPFAM
  • Domain found in 2F8X: [ANK ] by SMART
  • Other resources with information on 2F8X
  • Community annotation for 2F8X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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