2F8Z	Transferase	date	Dec 02, 2005
title	Crystal Structure Of Human Fpps In Complex With Zoledronate Isopentenyl Diphosphate
authors	J.M.Rondeau, F.Bitsch, E.Bourgier, M.Geiser, R.Hemmig, M.Kroemer S.Lehmann, P.Ramage, S.Rieffel, A.Strauss, J.R.Green, W.Jahnke
compound		source
Molecule: Farnesyl Diphosphate Synthase Chain: F Fragment: Residues 6-353 Synonym: Fpp Synthetase; Fps; Farnesyl Pyrophosphate Synthe Ec: 2.5.1.1, 2.5.1.10 Engineered: Yes Other_details: Includes: Dimethylallyltranstransferase Geranyltranstransferase		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fdps, Fps, Kiaa1293 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Tuner(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 41 21 2	R_factor 0.220 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.155 112.155 65.725 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	IPE, MG, ZOL BindingDB	enzyme	Transferase E.C.2.5.1.1 BRENDA
Gene Ontology	Chain Function Process Component F
Primary reference	Structural basis for the exceptional in vivo efficacy of bisphosphonate drugs., Rondeau JM, Bitsch F, Bourgier E, Geiser M, Hemmig R, Kroemer M, Lehmann S, Ramage P, Rieffel S, Strauss A, Green JR, Jahnke W, ChemMedChem. 2006 Feb;1(2):267-73. PMID:16892359

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (2f8z.pdb1.gz) 116 Kb LPC: Ligand-Protein Contacts for 2F8Z CSU: Contacts of Structural Units for 2F8Z Likely Quarternary Molecular Structure file(s) for 2F8Z Structure Factors (125 Kb) Retrieve 2F8Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F8Z from S2C, [Save to disk] Re-refined 2f8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F8Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F8Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F8Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f8z] [2f8z_F] SWISS-PROT database: [P14324] Domain organization of [FPPS_HUMAN] by SWISSPFAM

Other resources with information on 2F8Z

Community annotation for 2F8Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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