2F9D	Rna Binding Protein	date	Dec 05, 2005
title	2.5 Angstrom Resolution Structure Of The Spliceosomal Protei Bound To Region Of Sf3b155
authors	M.J.Schellenberg, R.A.Edwards, D.B.Ritchie, J.N.M.Glover, A.M.Ma
compound		source
Molecule: Pre-Mrna Branch Site Protein P14 Chain: A, B Synonym: Sf3b 14 Kda Subunit Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sf3b14 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmalc2x
Molecule: Splicing Factor 3b Subunit 1 Chain: P, Q Fragment: Residues: 373-415 Synonym: Spliceosome Associated Protein 155, Sap 155, Sf3b1 Mrna Splicing Factor Sf3b 155 Kda Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sf3b1, Sap155 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
symmetry	Space Group: C 2 2 21	R_factor 0.221 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.870 115.227 82.536 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of a core spliceosomal protein interface., Schellenberg MJ, Edwards RA, Ritchie DB, Kent OA, Golas MM, Stark H, Luhrmann R, Glover JN, Macmillan AM, Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1266-71. Epub 2006 Jan 23. PMID:16432215

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2f9d.pdb1.gz) 27 Kb Biological Unit Coordinates (2f9d.pdb2.gz) 27 Kb LPC: Ligand-Protein Contacts for 2F9D CSU: Contacts of Structural Units for 2F9D Likely Quarternary Molecular Structure file(s) for 2F9D Structure Factors (324 Kb) Retrieve 2F9D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F9D from S2C, [Save to disk] Re-refined 2f9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F9D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F9D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F9D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f9d] [2f9d_P] [2f9d_B] [2f9d_A] [2f9d_Q] SWISS-PROT database: [Q9Y3B4] [O75533] Domain organization of [PM14_HUMAN] [SF3B1_HUMAN] by SWISSPFAM Domain found in 2F9D: [RRM ] by SMART

Other resources with information on 2F9D

Community annotation for 2F9D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---