2F9Q Oxidoreductase date Dec 06, 2005
title Crystal Structure Of Human Cytochrome P450 2d6
authors P.Rowland
compound source
Molecule: Cytochrome P450 2d6
Chain: A, B, C, D
Synonym: Cypiid6; P450-Db1; Debrisoquine 4-Hydroxylase
Ec: 1.14.14.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2d6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.230 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.066 155.495 95.801 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand HEM, SO4 enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of human cytochrome P450 2D6., Rowland P, Blaney FE, Smyth MG, Jones JJ, Leydon VR, Oxbrow AK, Lewis CJ, Tennant MG, Modi S, Eggleston DS, Chenery RJ, Bridges AM, J Biol Chem. 2006 Mar 17;281(11):7614-22. Epub 2005 Dec 13. PMID:16352597
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (2f9q.pdb1.gz) 279 Kb
  • Biological Unit Coordinates (2f9q.pdb2.gz) 279 Kb
  • LPC: Ligand-Protein Contacts for 2F9Q
  • CSU: Contacts of Structural Units for 2F9Q
  • Likely Quarternary Molecular Structure file(s) for 2F9Q
  • Structure Factors (331 Kb)
  • Retrieve 2F9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F9Q from S2C, [Save to disk]
  • Re-refined 2f9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F9Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F9Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f9q_D] [2f9q] [2f9q_B] [2f9q_C] [2f9q_A]
  • SWISS-PROT database: [P10635]
  • Domain organization of [CP2D6_HUMAN] by SWISSPFAM
  • Other resources with information on 2F9Q
  • Community annotation for 2F9Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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