2FB8 Transferase date Dec 08, 2005
title Structure Of The B-Raf Kinase Domain Bound To Sb-590885
authors J.C.Lougheed, J.Lee, D.C.Chau, T.J.Stout
compound source
Molecule: B-Raf Proto-Oncogene Serinethreonine-Protein Kinase;
Chain: A, B
Fragment: B-Raf Kinase Domain, Residues 445-723
Synonym: P94, V-Raf Murine Sarcoma Viral Oncogene Homolog B1;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Braf, Braf1, Rafb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf-9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacgp67
symmetry Space Group: P 41 21 2
R_factor 0.199 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.638 95.638 159.222 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 215 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDemonstration of a genetic therapeutic index for tumors expressing oncogenic BRAF by the kinase inhibitor SB-590885., King AJ, Patrick DR, Batorsky RS, Ho ML, Do HT, Zhang SY, Kumar R, Rusnak DW, Takle AK, Wilson DM, Hugger E, Wang L, Karreth F, Lougheed JC, Lee J, Chau D, Stout TJ, May EW, Rominger CM, Schaber MD, Luo L, Lakdawala AS, Adams JL, Contractor RG, Smalley KS, Herlyn M, Morrissey MM, Tuveson DA, Huang PS, Cancer Res. 2006 Dec 1;66(23):11100-5. PMID:17145850
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2fb8.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2fb8.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2FB8
  • CSU: Contacts of Structural Units for 2FB8
  • Likely Quarternary Molecular Structure file(s) for 2FB8
  • Structure Factors (137 Kb)
  • Retrieve 2FB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FB8 from S2C, [Save to disk]
  • Re-refined 2fb8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FB8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FB8, from MSDmotif at EBI
  • Fold representative 2fb8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fb8_A] [2fb8] [2fb8_B]
  • SWISS-PROT database: [P15056]
  • Domain organization of [BRAF_HUMAN] by SWISSPFAM
  • Domain found in 2FB8: [STYKc ] by SMART
  • Other resources with information on 2FB8
  • Community annotation for 2FB8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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