2FCW Lipid Transport Endocytosis Chaperone date Dec 12, 2005
title Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap).
authors N.Beglova, C.Fisher, S.C.Blacklow
compound source
Molecule: Alpha-2-Macroglobulin Receptor-Associated Protein;
Chain: A
Fragment: Domain Three
Synonym: Alpha-2- Mrap, Low Density Lipoprotein Receptor- Related Protein-Associated Protein 1, Rap;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest15

Molecule: Low-Density Lipoprotein Receptor
Chain: B
Fragment: A Pair Of Ligand-Binding Modules 3 And 4
Synonym: Ldl Receptor
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ldlr
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmm
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.523 30.019 58.143 90.00 96.57 90.00
method X-Ray Diffractionresolution 1.26 Å
ligand CA, MPD, NA enzyme
note 2FCW is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of an LDLR-RAP complex reveals a general mode for ligand recognition by lipoprotein receptors., Fisher C, Beglova N, Blacklow SC, Mol Cell. 2006 Apr 21;22(2):277-83. PMID:16630895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2fcw.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (2fcw.pdb2.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 2FCW
  • CSU: Contacts of Structural Units for 2FCW
  • Likely Quarternary Molecular Structure file(s) for 2FCW
  • Structure Factors (366 Kb)
  • Retrieve 2FCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FCW from S2C, [Save to disk]
  • Re-refined 2fcw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FCW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FCW, from MSDmotif at EBI
  • Fold representative 2fcw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fcw_A] [2fcw] [2fcw_B]
  • SWISS-PROT database: [P30533] [P01130]
  • Domain organization of [AMRP_HUMAN] [LDLR_HUMAN] by SWISSPFAM
  • Domain found in 2FCW: [LDLa ] by SMART
  • Alignments of the sequence of 2FCW with the sequences similar proteins can be viewed for 2FCW's classification [AMRP_HUMAN] [LDLR_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AMRP_HUMAN] [LDLR_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2FCW
  • Community annotation for 2FCW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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