2FDU	Oxidoreductase	date	Dec 14, 2005
title	Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-(Pyrid Furan-2-Yl)Methanamine Bound
authors	J.K.Yano, C.D.Stout, E.F.Johnson
compound		source
Molecule: Cytochrome P450 2a6 Chain: A, B, C, D Synonym: Cypiia6, Coumarin 7-Hydroxylase, P450 Iia3, Cyp2a3 Ec: 1.14.14.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cyp2a6 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh-5 Alpha Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcwori
symmetry	Space Group: P 1 21 1	R_factor 0.186 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.809 157.698 103.886 90.00 92.23 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	D1G, HEM, SO4 BindingDB	enzyme	Oxidoreductase E.C.1.14.14.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Synthetic Inhibitors of Cytochrome P-450 2A6: Inhibitory Activity, Difference Spectra, Mechanism of Inhibition, and Protein Cocrystallization., Yano JK, Denton TT, Cerny MA, Zhang X, Johnson EF, Cashman JR, J Med Chem. 2006 Nov 30;49(24):6987-7001. PMID:17125252

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk] Biological Unit Coordinates (2fdu.pdb1.gz) 85 Kb Biological Unit Coordinates (2fdu.pdb2.gz) 82 Kb Biological Unit Coordinates (2fdu.pdb3.gz) 86 Kb Biological Unit Coordinates (2fdu.pdb4.gz) 85 Kb LPC: Ligand-Protein Contacts for 2FDU CSU: Contacts of Structural Units for 2FDU Likely Quarternary Molecular Structure file(s) for 2FDU Structure Factors (2980 Kb) Retrieve 2FDU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FDU from S2C, [Save to disk] Re-refined 2fdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FDU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FDU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FDU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fdu_B] [2fdu_D] [2fdu_A] [2fdu_C] [2fdu] SWISS-PROT database: [P11509] Domain organization of [CP2A6_HUMAN] by SWISSPFAM

Other resources with information on 2FDU

Community annotation for 2FDU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---