2FFK Virus Viral Protein Cytokine date Dec 19, 2005
title Solution Structure Of The Complex Between Poxvirus-Encoded Cc Chemokine Inhibitor Vcci And Human Mip-1beta, Minimized Average Structure
authors L.Zhang
compound source
Molecule: Rabbitpox Encoded Cc Chemokine Inhibitor
Chain: A
Synonym: Vcci, 35 Kda, P35
Engineered: Yes
Organism_scientific: Rabbitpox Virus
Organism_taxid: 32606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Smd1168
Expression_system_vector_type: Ppic9k

Molecule: Small Inducible Cytokine A4
Chain: B
Synonym: Macrophage Inflammatory Protein 1-Beta, Mip-1- Beta;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl4, Lag1, Mip1b, Scya4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Pet-32 Xa Lic
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceSolution structure of the complex between poxvirus-encoded CC chemokine inhibitor vCCI and human MIP-1beta., Zhang L, Derider M, McCornack MA, Jao SC, Isern N, Ness T, Moyer R, LiWang PJ, Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):13985-90. Epub 2006 Sep 8. PMID:16963564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2FFK
  • Retrieve 2FFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FFK from S2C, [Save to disk]
  • View 2FFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FFK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FFK, from MSDmotif at EBI
  • Fold representative 2ffk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ffk_B] [2ffk] [2ffk_A]
  • SWISS-PROT database: [P13236] [O10647]
  • Domain organization of [CCL4_HUMAN] [O10647_9POXV] by SWISSPFAM
  • Domain found in 2FFK: [SCY ] by SMART
  • Other resources with information on 2FFK
  • Community annotation for 2FFK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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