2FGW X-RAY STRUCTURES OF FRAGMENTS FROM BINDING AND NONBINDING VERSIONS OF A HUMANIZED ANTI-CD18 ANTIBODY: STRUCTURAL INDICATIONS OF THE KEY ROLE OF VH RESIDUES 59 TO 65 date
authors Eigenbrot, C., Kessler, J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
related structures by homologous chain: 1CL7, 1FSK, 1KYO
Primary referenceX-ray structures of fragments from binding and nonbinding versions of a humanized anti-CD18 antibody: structural indications of the key role of VH residues 59 to 65., Eigenbrot C, Gonzalez T, Mayeda J, Carter P, Werther W, Hotaling T, Fox J, Kessler J, Proteins 1994 Jan;18(1):49-62. PMID:7908437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2fgw.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 2FGW
  • Likely Quarternary Molecular Structure file(s) for 2FGW
  • Retrieve 2FGW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FGW from S2C, [Save to disk]
  • View 2FGW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FGW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FGW, from MSDmotif at EBI
  • Genome occurence of 2FGW's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2fgwh1, region H:1-124 [Jmol] [rasmolscript] [script source]
        - Domain d2fgwh2, region H:125-228 [Jmol] [rasmolscript] [script source]
        - Domain d2fgwl1, region L:1-108 [Jmol] [rasmolscript] [script source]
        - Domain d2fgwl2, region L:109-214 [Jmol] [rasmolscript] [script source]
  • Fold representative 2fgw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fgw_H] [2fgw_L] [2fgw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2FGW: [IG_like] [IGv ] by SMART
  • Other resources with information on 2FGW
  • Community annotation for 2FGW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2FGW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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