2FH7 Hydrolase date Dec 23, 2005
title Crystal Structure Of The Phosphatase Domains Of Human Ptp Si
authors J.Alvarado, R.Udupi, D.Smith, J.Koss, S.R.Wasserman, S.Ozyurt, S.A A.Powell, M.C.Kearins, I.Rooney, M.Maletic, K.T.Bain, J.C.Freema M.Russell, D.A.Thompson, J.M.Sauder, S.K.Burley, S.C.Almo, New Y Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase S
Chain: A
Fragment: Cytoplasmic Phosphatase Domains
Synonym: R-Ptp-S, Protein-Tyrosine Phosphatase Sigma, R-Ptp
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon+ Ril
Expression_system_vector_type: Plasmid
symmetry Space Group: P 61
R_factor 0.190 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.333 94.333 123.036 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural genomics of protein phosphatases., Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK, J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (2fh7.pdb1.gz) 102 Kb
  • CSU: Contacts of Structural Units for 2FH7
  • Likely Quarternary Molecular Structure file(s) for 2FH7
  • Structure Factors (322 Kb)
  • Retrieve 2FH7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FH7 from S2C, [Save to disk]
  • Re-refined 2fh7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FH7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FH7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FH7, from MSDmotif at EBI
  • Fold representative 2fh7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fh7] [2fh7_A]
  • SWISS-PROT database: [Q13332]
  • Domain organization of [PTPRS_HUMAN] by SWISSPFAM
  • Domain found in 2FH7: [PTPc ] by SMART
  • Other resources with information on 2FH7
  • Community annotation for 2FH7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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