2FI2 Transcription date Dec 27, 2005
title Solution Structure Of The Scan Homodimer From Mzf-1znf42
authors B.F.Volkman, F.C.Peterson, T.L.Sander, J.K.Waltner, Center For Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Zinc Finger Protein 42
Chain: A, B
Fragment: Scan Domain, Residues 37-128
Synonym: Myeloid Zinc Finger 1, Mzf-1, Zinc Finger And Scan Domain Containing Protein 6;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Znf42, Mzf1, Zscan6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30gb1
methodSolution NMR
Primary referenceStructure of the SCAN domain from the tumor suppressor protein MZF1., Peterson FC, Hayes PL, Waltner JK, Heisner AK, Jensen DR, Sander TL, Volkman BF, J Mol Biol. 2006 Oct 13;363(1):137-47. Epub 2006 Jul 31. PMID:16950398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1097 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2FI2
  • Original NMR restraints for 2FI2 from PDB
  • Retrieve 2FI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FI2 from S2C, [Save to disk]
  • View 2FI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FI2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FI2, from MSDmotif at EBI
  • Fold representative 2fi2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fi2_A] [2fi2] [2fi2_B]
  • SWISS-PROT database: [P28698]
  • Domain organization of [MZF1_HUMAN] by SWISSPFAM
  • Domain found in 2FI2: [SCAN ] by SMART
  • Other resources with information on 2FI2
  • Community annotation for 2FI2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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