2FJ7 Structural Protein Dna date Dec 31, 2005
title Crystal Structure Of Nucleosome Core Particle Containing A P (Da.Dt) Sequence Element
authors Y.Bao, C.L.White, K.Luger
compound source
Molecule: 147 Bp Dna Containing 16 Bp Poly Da Element
Chain: I
Engineered: Yes
Synthetic: Yes

Molecule: 147 Bp Dna Containing 16 Bp Poly Dt Element
Chain: J
Engineered: Yes

Synthetic: Yes

Molecule: Histone H3
Chain: A, E
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: C, G
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: D, H
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.280 R_Free 0.350
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.918 109.598 177.969 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceNucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure., Bao Y, White CL, Luger K, J Mol Biol. 2006 Aug 25;361(4):617-24. Epub 2006 Jul 5. PMID:16860337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (2fj7.pdb1.gz) 219 Kb
  • CSU: Contacts of Structural Units for 2FJ7
  • Likely Quarternary Molecular Structure file(s) for 2FJ7
  • Structure Factors (704 Kb)
  • Retrieve 2FJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FJ7 from S2C, [Save to disk]
  • Re-refined 2fj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FJ7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FJ7, from MSDmotif at EBI
  • Fold representative 2fj7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fj7_G] [2fj7_C] [2fj7_I] [2fj7] [2fj7_E] [2fj7_F] [2fj7_D] [2fj7_A] [2fj7_H] [2fj7_J] [2fj7_B]
  • SWISS-PROT database: [P06897] [P02281] [P84233] [P62799]
  • Domain organization of [H2A1_XENLA] [H2B11_XENLA] [H32_XENLA] [H4_XENLA] by SWISSPFAM
  • Domains found in 2FJ7: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 2FJ7
  • Community annotation for 2FJ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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