2FJC Metal Transport date Jan 02, 2006
title Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
authors A.Thumiger, A.Polenghi, E.Papinutto, R.Battistutta, C.Montecucco G.Zanotti
compound source
Molecule: Antigen Tpf1
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Synonym: Antigen C1-5, Antigen 4d
Engineered: Yes
Organism_scientific: Treponema Pallidum
Organism_taxid: 160
Gene: Tpf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl 1blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psm214g-Tpf1
symmetry Space Group: P 3 2 1
R_factor 0.227 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.921 184.921 154.883 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand FE enzyme
note 2FJC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G


Primary referenceCrystal structure of antigen TpF1 from Treponema pallidum., Thumiger A, Polenghi A, Papinutto E, Battistutta R, Montecucco C, Zanotti G, Proteins. 2005 Dec 12;. PMID:16345079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (394 Kb) [Save to disk]
  • Biological Unit Coordinates (2fjc.pdb1.gz) 292 Kb
  • Biological Unit Coordinates (2fjc.pdb2.gz) 294 Kb
  • Biological Unit Coordinates (2fjc.pdb3.gz) 1157 Kb
  • LPC: Ligand-Protein Contacts for 2FJC
  • CSU: Contacts of Structural Units for 2FJC
  • Likely Quarternary Molecular Structure file(s) for 2FJC
  • Structure Factors (854 Kb)
  • Retrieve 2FJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FJC from S2C, [Save to disk]
  • Re-refined 2fjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FJC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FJC, from MSDmotif at EBI
  • Fold representative 2fjc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fjc_H] [2fjc_P] [2fjc_O] [2fjc_A] [2fjc_F] [2fjc_L] [2fjc_D] [2fjc_I] [2fjc_N] [2fjc_K] [2fjc] [2fjc_B] [2fjc_E] [2fjc_C] [2fjc_J] [2fjc_M] [2fjc_G]
  • SWISS-PROT database: [P16665]
  • Domain organization of [TPF1_TREPA] by SWISSPFAM
  • Other resources with information on 2FJC
  • Community annotation for 2FJC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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