2FJZ	Metal Binding Protein	date	Jan 03, 2006
title	Structure Of The Alzheimer'S Amyloid Precursor Protein (App) Copper Binding Domain (Residues 133 To 189) In 'Small Unit Cell' Form, Metal-Free
authors	G.K.W.Kong, M.W.Parker
compound		source
Molecule: Amyloid Beta A4 Protein Precursor Chain: A Fragment: Residues 133 To 189 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: App Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: Gs115 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppic-9
symmetry	Space Group: P 21 21 21	R_factor 0.177 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 31.346 32.518 50.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.61 Å
Primary reference	Structural Studies of the Alzheimer's Amyloid Precursor Protein Copper-binding Domain Reveal How it Binds Copper Ions., Kong GK, Adams JJ, Harris HH, Boas JF, Curtain CC, Galatis D, Masters CL, Barnham KJ, McKinstry WJ, Cappai R, Parker MW, J Mol Biol. 2007 Mar 16;367(1):148-61. Epub 2006 Dec 21. PMID:17239395

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk] Biological Unit Coordinates (2fjz.pdb1.gz) 13 Kb CSU: Contacts of Structural Units for 2FJZ Likely Quarternary Molecular Structure file(s) for 2FJZ Structure Factors (54 Kb) Retrieve 2FJZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FJZ from S2C, [Save to disk] Re-refined 2fjz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FJZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2FJZ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2FJZ, from MSDmotif at EBI Fold representative 2fjz from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fjz_A] SWISS-PROT database: [P05067] Belongs to the amyloid -protein peptide (app) family according to TCDB. Domain organization of [A4_HUMAN] by SWISSPFAM Domain found in 2FJZ: [A4_EXTRA ] by SMART Alignments of the sequence of 2FJZ with the sequences similar proteins can be viewed for 2FJZ's classification [A4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [A4_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2FJZ

Community annotation for 2FJZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---