2FK6	Hydrolase Rna	date	Jan 04, 2006
title	Crystal Structure Of Rnase Ztrna(Thr) Complex
authors	I.Li De La Sierra-Gallay, N.Mathy, O.Pellegrini, C.Condon
compound		source
Molecule: Trna(Thr) Chain: R Engineered: Yes		Synthetic: Yes Other_details: B.Subtilis Trnathr(Encoded By The Trn1-Thr G Transcribed In Vitro As A Precursor With 6 Nt 3'-Extension Fragment Generated From Plasmid Phmt1, Using Oligonucleotid And Cc079;
Molecule: Ribonuclease Z Chain: A Synonym: Rnase Z; Trnase Z; Trna 3 Endonuclease Ec: 3.1.26.11 Engineered: Yes Mutation: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Strain: W168 Gene: Rnz Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus (Lambdade3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
symmetry	Space Group: C 1 2 1	R_factor 0.250 R_Free 0.299
crystal cell	length a length b length c angle alpha angle beta angle gamma 173.540 42.400 110.430 90.00 121.42 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	GOL, MES, ZN	enzyme	Hydrolase E.C.3.1.26.11 BRENDA
note	2FK6 (Molecule of the Month:pdb105)
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA., Li de la Sierra-Gallay I, Mathy N, Pellegrini O, Condon C, Nat Struct Mol Biol. 2006 Mar 5;. PMID:16518398

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (2fk6.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 2FK6 CSU: Contacts of Structural Units for 2FK6 Likely Quarternary Molecular Structure file(s) for 2FK6 Structure Factors (121 Kb) Retrieve 2FK6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FK6 from S2C, [Save to disk] Re-refined 2fk6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FK6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FK6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FK6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fk6_A] [2fk6_R] [2fk6] SWISS-PROT database: [P54548] Domain organization of [RNZ_BACSU] by SWISSPFAM Domain found in 2FK6: [Lactamase_B ] by SMART

Other resources with information on 2FK6

Community annotation for 2FK6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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