2FLR Hydrolase Blood Clotting date Jan 06, 2006
title Novel 5-Azaindole Factor Viia Inhibitors
authors J.R.Riggs, H.Hu, A.Kolesnikov, Z.Tong, E.M.Leahy, K.E.Wesson, W.D.Shrader, D.Vijaykumar, T.A.Wahl, P.A.Sprengeler, M.J.Green, C.Yu, B.A.Katz, W.B.Young
compound source
Molecule: Coagulation Factor Vii
Chain: L
Fragment: Light Chain, Residues 61-212
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Coagulation Factor Vii
Chain: H
Fragment: Heavy Chain, Residues 213-466
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tissue Factor
Chain: T
Fragment: Residues 34-251
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Antigen;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Des3
Expression_system_vector_type: Plasmid Pet-21a(+)
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.310 68.640 77.890 90.00 91.15 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 7NH BindingDB enzyme Hydrolase E.C.3.4.21.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Primary referenceNovel 5-azaindole factor VIIa inhibitors., Riggs JR, Hu H, Kolesnikov A, Leahy EM, Wesson KE, Shrader WD, Vijaykumar D, Wahl TA, Tong Z, Sprengeler PA, Green MJ, Yu C, Katz BA, Sanford E, Nguyen M, Cabuslay R, Young WB, Bioorg Med Chem Lett. 2006 Jun 15;16(12):3197-200. Epub 2006 Apr 18. PMID:16621549
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2flr.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2FLR
  • CSU: Contacts of Structural Units for 2FLR
  • Likely Quarternary Molecular Structure file(s) for 2FLR
  • Structure Factors (234 Kb)
  • Retrieve 2FLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FLR from S2C, [Save to disk]
  • Re-refined 2flr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FLR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FLR, from MSDmotif at EBI
  • Fold representative 2flr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2flr_T] [2flr_L] [2flr_H] [2flr]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 2FLR: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 2FLR with the sequences similar proteins can be viewed for 2FLR's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2FLR
  • Community annotation for 2FLR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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