2FNE	Structural Genomics, Unknown Function	date	Jan 11, 2006
title	The Crystal Structure Of The 13th Pdz Domain Of Mpdz
authors	E.Papagrigoriou, G.Berridge, C.Johansson, S.Colebrook, E.Salah, N C.Smee, P.Savitsky, J.Bray, G.Schoch, C.Phillips, C.Gileadi, M.Soundarajan, X.Yang, J.M.Elkins, F.Gorrec, A.Turnbull, A.Edwar C.Arrowsmith, J.Weigelt, M.Sundstrom, D.A.Doyle, Structural Gen Consortium (Sgc)
compound		source
Molecule: Multiple Pdz Domain Protein Chain: A, B, C Fragment: Mpdz Domain, Residues 1955-2042 Synonym: Multi Pdz Domain Protein 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mpdz, Mupp1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl-21(De3)R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 1 21 1	R_factor 0.190 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.943 62.380 53.128 90.00 106.26 90.00
method	X-Ray Diffraction	resolution	1.83 Å
Primary reference	Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions., Elkins JM, Papagrigoriou E, Berridge G, Yang X, Phillips C, Gileadi C, Savitsky P, Doyle DA, Protein Sci. 2007 Apr;16(4):683-94. PMID:17384233

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (2fne.pdb1.gz) 17 Kb Biological Unit Coordinates (2fne.pdb2.gz) 17 Kb Biological Unit Coordinates (2fne.pdb3.gz) 17 Kb Biological Unit Coordinates (2fne.pdb4.gz) 33 Kb CSU: Contacts of Structural Units for 2FNE Likely Quarternary Molecular Structure file(s) for 2FNE Structure Factors (185 Kb) Retrieve 2FNE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FNE from S2C, [Save to disk] Re-refined 2fne structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FNE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FNE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FNE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fne_A] [2fne] [2fne_C] [2fne_B] SWISS-PROT database: [O75970] Domain organization of [MPDZ_HUMAN] by SWISSPFAM Domain found in 2FNE: [PDZ ] by SMART

Other resources with information on 2FNE

Community annotation for 2FNE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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