2FO1 Gene Regulation Signalling Protein Dna date Jan 12, 2006
title Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna
authors J.J.Wilson, R.A.Kovall
compound source
Molecule: 5'- D(Tptpapcptpgptpgpgpgpapapapgpa)-3';
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: The Sequence Comes From A Region Within The Mammalian Hes-1 Promoter;

Molecule: 5'- D(Apaptpcptptptpcpcpcpapcpapgpt)-3';
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: The Sequence Comes From A Region Within The Mammalian Hes-1 Promoter;

Molecule: Lin-12 And Glp-1 Phenotype Protein 1, Isoform B
Chain: A
Fragment: Core (Residues 192-663)
Synonym: Lag-1
Engineered: Yes

Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Lag-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1

Molecule: Protein Lag-3
Chain: D
Fragment: Conserved N-Terminus (49-132)
Synonym: Protein Sel-8, Abnormal Germ Line Proliferation Protein 3, Abnormal Cell Lineage Protein 3;
Engineered: Yes

Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Sel-8, Lag-3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a Psmt Variant

Molecule: Lin-12 Protein
Chain: E
Fragment: Ram And Ank Repeat Domains (931-1303)
Engineered: Yes

Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Lin-12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2
symmetry Space Group: P 21 21 21
R_factor 0.273 R_Free 0.340
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.093 96.785 243.538 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.12 Å
ligand MSE enzyme
note 2FO1 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA., Wilson JJ, Kovall RA, Cell. 2006 Mar 10;124(5):985-96. PMID:16530045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (2fo1.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2FO1
  • CSU: Contacts of Structural Units for 2FO1
  • Likely Quarternary Molecular Structure file(s) for 2FO1
  • Structure Factors (331 Kb)
  • Retrieve 2FO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FO1 from S2C, [Save to disk]
  • Re-refined 2fo1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FO1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FO1, from MSDmotif at EBI
  • Fold representative 2fo1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fo1_C] [2fo1_A] [2fo1] [2fo1_D] [2fo1_B] [2fo1_E]
  • SWISS-PROT database: [Q09260] [P14585] [Q8MXE7]
  • Domain organization of [LAG3_CAEEL] [LIN12_CAEEL] [Q8MXE7_CAEEL] by SWISSPFAM
  • Domains found in 2FO1: [ANK] [BTD] [LAG1_DNAbind ] by SMART
  • Other resources with information on 2FO1
  • Community annotation for 2FO1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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