2FOJ	Hydrolase	date	Jan 13, 2006
title	The Crystal Strucure Of The N-Terminal Domain Of Hauspusp7 Complexed With P53 Peptide 364-367
authors	V.Saridakis, Y.Sheng, F.Sarkari, S.Duan, T.Wu, C.H.Arrowsmith, L.Frappier
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7 Chain: A Fragment: Math Domain Synonym: Ubiquitin Thiolesterase 7, Ubiquitin-Specific Processing Protease 7, Deubiquitinating Enzyme 7, Herpesvirus Associated Ubiquitin-Specific Protease; Ec: 3.1.2.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Usp7, Hausp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: P53 Peptide Chain: B Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 41	R_factor 0.229 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.000 70.000 45.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand		enzyme	Hydrolase E.C.3.1.2.15 BRENDA
Primary reference	Molecular recognition of p53 and MDM2 by USP7/HAUSP., Sheng Y, Saridakis V, Sarkari F, Duan S, Wu T, Arrowsmith CH, Frappier L, Nat Struct Mol Biol. 2006 Mar;13(3):285-91. Epub 2006 Feb 12. PMID:16474402

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (2foj.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 2FOJ Likely Quarternary Molecular Structure file(s) for 2FOJ Structure Factors (401 Kb) Retrieve 2FOJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FOJ from S2C, [Save to disk] Re-refined 2foj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FOJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2FOJ

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2FOJ, from MSDmotif at EBI Fold representative 2foj from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2foj_A] [2foj_B] SWISS-PROT database: [P04637] [Q93009] Domain organization of [P53_HUMAN] [UBP7_HUMAN] by SWISSPFAM Domain found in 2FOJ: [MATH ] by SMART Alignments of the sequence of 2FOJ with the sequences similar proteins can be viewed for 2FOJ's classification [P53_HUMAN] [UBP7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] [UBP7_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2FOJ

Community annotation for 2FOJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---