2FOO Hydrolase date Jan 13, 2006
title The Crystal Strucure Of The N-Terminal Domain Of Hauspusp7 Complexed With P53 Peptide 359-362
authors V.Saridakis, Y.Sheng, F.Sarkari, S.Duan, T.Wu, C.H.Arrowsmith, L.Frappier
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A
Fragment: Math Domain
Synonym: Ubiquitin Thiolesterase 7, Ubiquitin-Specific Processing Protease 7, Deubiquitinating Enzyme 7, Herpesvirus Associated Ubiquitin-Specific Protease;
Ec: 3.1.2.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hausp, Usp7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: P53 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 41
R_factor 0.203 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.825 69.825 45.529 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.1.2.15 BRENDA
Primary referenceMolecular recognition of p53 and MDM2 by USP7/HAUSP., Sheng Y, Saridakis V, Sarkari F, Duan S, Wu T, Arrowsmith CH, Frappier L, Nat Struct Mol Biol. 2006 Mar;13(3):285-91. Epub 2006 Feb 12. PMID:16474402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2foo.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2FOO
  • Likely Quarternary Molecular Structure file(s) for 2FOO
  • Structure Factors (93 Kb)
  • Retrieve 2FOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FOO from S2C, [Save to disk]
  • Re-refined 2foo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FOO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FOO, from MSDmotif at EBI
  • Fold representative 2foo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2foo] [2foo_B] [2foo_A]
  • SWISS-PROT database: [P04637] [Q93009]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] [UBP7_HUMAN] by SWISSPFAM
  • Domain found in 2FOO: [MATH ] by SMART
  • Alignments of the sequence of 2FOO with the sequences similar proteins can be viewed for 2FOO's classification [P53_HUMAN] [UBP7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] [UBP7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2FOO
  • Community annotation for 2FOO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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