2FTC Ribosome date Jan 24, 2006
title Structural Model For The Large Subunit Of The Mammalian Mito Ribosome
authors J.A.Mears, M.R.Sharma, R.R.Gutell, P.E.Richardson, R.K.Agrawal, S
compound source
Molecule: Mitochondrial 16s Ribosomal Rna
Chain: R
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L1
Chain: A

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L2
Chain: B

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial 39s Ribosomal Protein L3
Chain: C
Synonym: L3mt, Mrp-L3

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L4 Isoform A
Chain: D

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: 39s Ribosomal Protein L12, Mitochondrial
Chain: E, F
Synonym: L12mt, Mrp-L12

Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913

Molecule: 39s Ribosomal Protein L11, Mitochondrial
Chain: G
Synonym: L11mt, Mrp-L11

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: 39s Ribosomal Protein L13, Mitochondrial
Chain: H
Synonym: L13mt, Mrp-L13

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L16
Chain: I

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L17
Chain: J

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: 39s Ribosomal Protein L19, Mitochondrial
Chain: K
Synonym: L19mt, Mrp-L19, Mrp-L15

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mrpl20 Protein
Chain: L

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L22 Isoform A
Chain: M

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L24
Chain: N

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial 39s Ribosomal Protein L27
Chain: O
Synonym: L27mt, Mrp-L27

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Mitochondrial Ribosomal Protein L33 Isoform A
Chain: P

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: 39s Ribosomal Protein L34, Mitochondrial
Chain: Q
Synonym: L34mt, Mrp-L34

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 12.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


F, E


G


H


I


J


K


L


M


N


O


P


Q


Primary referenceA structural model for the large subunit of the Mammalian mitochondrial ribosome., Mears JA, Sharma MR, Gutell RR, McCook AS, Richardson PE, Caulfield TR, Agrawal RK, Harvey SC, J Mol Biol. 2006 Apr 21;358(1):193-212. Epub 2006 Feb 10. PMID:16510155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2ftc.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 2FTC
  • Likely Quarternary Molecular Structure file(s) for 2FTC
  • Retrieve 2FTC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FTC from S2C, [Save to disk]
  • View 2FTC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FTC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FTC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ftc_O] [2ftc_D] [2ftc_F] [2ftc_K] [2ftc_H] [2ftc_M] [2ftc_G] [2ftc_P] [2ftc_A] [2ftc_N] [2ftc_R] [2ftc_B] [2ftc] [2ftc_Q] [2ftc_C] [2ftc_L] [2ftc_E] [2ftc_I] [2ftc_J]
  • SWISS-PROT database: [Q7YR75] [Q2HJI0] [Q3SYS0]
  • Domain organization of [RM12_BOVIN] [RM19_BOVIN] [RM24_BOVIN] by SWISSPFAM
  • Domains found in 2FTC: [KOW] [RL11] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 2FTC
  • Community annotation for 2FTC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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