2FUH	Ligase	date	Jan 26, 2006
title	Solution Structure Of The Ubch5cub Non-Covalent Complex
authors	P.S.Brzovic, A.Lissounov, D.W.Hoyt, R.E.Klevit
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 D3 Chain: A Fragment: Ubch5c Synonym: Ubiquitin-Protein Ligase D3, Ubiquitin Carrier Pro Ubiquitin-Conjugating Enzyme E2-17 Kda 3, E217, Kb 3; Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2d3, Ubch5c Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
Molecule: Ubiquitin Chain: B Fragment: Ubiquitin Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Rps27a, Uba80, Ubcep1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
method	Solution NMR
ligand		enzyme	Ligase E.C.6.3.2.19 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A UbcH5/ubiquitin noncovalent complex is required for processive BRCA1-directed ubiquitination., Brzovic PS, Lissounov A, Christensen DE, Hoyt DW, Klevit RE, Mol Cell. 2006 Mar 17;21(6):873-80. PMID:16543155

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (597 Kb) [Save to disk] Biological Unit Coordinates (2fuh.pdb1.gz) 59 Kb CSU: Contacts of Structural Units for 2FUH Original NMR restraints for 2FUH from PDB Retrieve 2FUH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FUH from S2C, [Save to disk]

View 2FUH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FUH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FUH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fuh_A] [2fuh] [2fuh_B] SWISS-PROT database: [P61077] [P62988] Domain organization of [UB2D3_HUMAN] [UBIQ_HUMAN] by SWISSPFAM Domains found in 2FUH: [UBCc] [UBQ ] by SMART

Other resources with information on 2FUH

Community annotation for 2FUH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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