2FV2	Transcription	date	Jan 28, 2006
title	Crystal Structure Analysis Of Human Rcd-1 Conserved Region
authors	R.G.Garces, W.Gillon, E.F.Pai
compound		source
Molecule: Rcd1 Required For Cell Differentiation1 Homolog Chain: A, B, C, D Fragment: (Residues: 18 - 285) Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rcd1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet 32
symmetry	Space Group: P 1	R_factor 0.217 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.508 68.963 69.361 94.16 117.26 91.91
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Atomic model of human Rcd-1 reveals an armadillo-like-repeat protein with in vitro nucleic acid binding properties., Garces RG, Gillon W, Pai EF, Protein Sci. 2006 Dec 22;. PMID:17189474

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (2fv2.pdb1.gz) 91 Kb Biological Unit Coordinates (2fv2.pdb2.gz) 91 Kb LPC: Ligand-Protein Contacts for 2FV2 CSU: Contacts of Structural Units for 2FV2 Likely Quarternary Molecular Structure file(s) for 2FV2 Structure Factors (449 Kb) Retrieve 2FV2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FV2 from S2C, [Save to disk] Re-refined 2fv2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FV2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FV2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FV2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fv2_C] [2fv2] [2fv2_A] [2fv2_B] [2fv2_D] SWISS-PROT database: [Q92600] Domain organization of [RCD1_HUMAN] by SWISSPFAM

Other resources with information on 2FV2

Community annotation for 2FV2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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