2FV5 Hydrolase date Jan 30, 2006
title Crystal Structure Of Tace In Complex With Ik682
authors P.Orth, X.Niu
compound source
Molecule: Adam 17
Chain: A, B
Synonym: A Disintegrin And Metalloproteinase Domain 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Convertase, Snake Venom-Like Protease, Cd156b Antigen;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.614 75.696 103.258 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 541, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIK682, a tight binding inhibitor of TACE., Niu X, Umland S, Ingram R, Beyer BM, Liu YH, Sun J, Lundell D, Orth P, Arch Biochem Biophys. 2006 Jul 1;451(1):43-50. Epub 2006 May 5. PMID:16762314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2fv5.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2fv5.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2FV5
  • CSU: Contacts of Structural Units for 2FV5
  • Likely Quarternary Molecular Structure file(s) for 2FV5
  • Structure Factors (286 Kb)
  • Retrieve 2FV5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FV5 from S2C, [Save to disk]
  • Re-refined 2fv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FV5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FV5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FV5, from MSDmotif at EBI
  • Fold representative 2fv5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fv5_A] [2fv5] [2fv5_B]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 2FV5
  • Community annotation for 2FV5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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