2FW2 Gene Regulation date Jan 31, 2006
title Catalytic Domain Of Cdy
authors J.R.Min, T.Antoshenko, H.Wu, J.Weigelt, M.Sundstrom, C.Arrowsmith A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Structural Genomics C (Sgc)
compound source
Molecule: Testis-Specific Chromodomain Protein Y 2
Chain: A, B, C, D, E, F
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdy2a, Cdy2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Codon Plus Ril
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.454 133.579 82.328 90.00 117.56 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]
  • Biological Unit Coordinates (2fw2.pdb1.gz) 244 Kb
  • Biological Unit Coordinates (2fw2.pdb2.gz) 123 Kb
  • Biological Unit Coordinates (2fw2.pdb3.gz) 125 Kb
  • CSU: Contacts of Structural Units for 2FW2
  • Likely Quarternary Molecular Structure file(s) for 2FW2
  • Structure Factors (602 Kb)
  • Retrieve 2FW2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FW2 from S2C, [Save to disk]
  • Re-refined 2fw2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FW2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FW2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FW2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fw2_A] [2fw2_C] [2fw2_E] [2fw2_B] [2fw2] [2fw2_D] [2fw2_F]
  • SWISS-PROT database: [Q9Y6F7]
  • Domain organization of [CDY2_HUMAN] by SWISSPFAM
  • Other resources with information on 2FW2
  • Community annotation for 2FW2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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