2FYJ Protein Binding date Feb 08, 2006
title Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
authors G.A.Jensen, O.M.Andersen, A.M.Bonvin, I.Bjerrum-Bohr, M.Etzerodt, C.O'Shea, F.M.Poulsen, B.B.Kragelund
compound source
Molecule: Low-Density Lipoprotein Receptor-Related Protein 1;
Chain: A
Synonym: Lrp, Alpha-2-Macroglobulin Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrp1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7
methodSolution NMR
Primary referenceBinding Site Structure of One LRP-RAP Complex:Implications for a Common Ligand-Receptor Binding Motif., Jensen GA, Andersen OM, Bonvin AM, Bjerrum-Bohr I, Etzerodt M, Thogersen HC, O'shea C, Poulsen FM, Kragelund BB, J Mol Biol. 2006 Sep 29;362(4):700-16. Epub 2006 Jul 15. PMID:16938309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2FYJ
  • Original NMR restraints for 2FYJ from PDB
  • Retrieve 2FYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FYJ from S2C, [Save to disk]
  • View 2FYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FYJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FYJ, from MSDmotif at EBI
  • Fold representative 2fyj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fyj] [2fyj_A]
  • SWISS-PROT database: [Q07954]
  • Domain organization of [LRP1_HUMAN] by SWISSPFAM
  • Domain found in 2FYJ: [LDLa ] by SMART
  • Other resources with information on 2FYJ
  • Community annotation for 2FYJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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