2FYL	Surface Active Protein	date	Feb 08, 2006
title	Haddock Model Of The Complex Between Double Module Of Lrp, C First Domain Of Receptor Associated Protein, Rap-D1.
authors	G.A.Jensen, O.M.Andersen, A.M.Bonvin, I.Bjerrum-Bohr, M.Etzerodt C.O'Shea, F.M.Poulsen, B.B.Kragelund
compound		source
Molecule: Alpha-2-Macroglobulin Receptor-Associated Protein Chain: A Fragment: Rapd1 Synonym: Alpha-2- Mrap, Low Density Lipoprotein Receptor-Re Protein-Associated Protein 1, Rap; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lrpap1, A2mrap Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Low-Density Lipoprotein Receptor-Related Protein Chain: B Fragment: Cr56 Synonym: Lrp, Alpha-2-Macroglobulin Receptor Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lrp1 Expression_system: Escherichia Coli Expression_system_taxid: 562
method	Solution NMR
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Binding Site Structure of One LRP-RAP Complex:Implications for a Common Ligand-Receptor Binding Motif., Jensen GA, Andersen OM, Bonvin AM, Bjerrum-Bohr I, Etzerodt M, Thogersen HC, O'shea C, Poulsen FM, Kragelund BB, J Mol Biol. 2006 Sep 29;362(4):700-16. Epub 2006 Jul 15. PMID:16938309

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (2fyl.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 2FYL CSU: Contacts of Structural Units for 2FYL Original NMR restraints for 2FYL from PDB Retrieve 2FYL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FYL from S2C, [Save to disk]

View 2FYL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FYL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FYL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fyl_B] [2fyl_A] [2fyl] SWISS-PROT database: [P30533] [Q07954] Domain organization of [AMRP_HUMAN] [LRP1_HUMAN] by SWISSPFAM Domain found in 2FYL: [LDLa ] by SMART

Other resources with information on 2FYL

Community annotation for 2FYL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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