2G2I Transferase date Feb 16, 2006
title A Src-Like Inactive Conformation In The Abl Tyrosine Kinase
authors N.M.Levinson, O.Kuchment
compound source
Molecule: Abl Tyrosine Kinase
Chain: A, B
Fragment: Abl Tyrosine Kinase Domain
Synonym: P150, C- Abl, Abelson Murine Leukemia Viral Oncoge 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl1, Abl, Jtk7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp-Peptide Conjugate
Chain: C, D
Engineered: Yes

Synthetic: Yes
Other_details: Solid Phase Peptide Synthesis
symmetry Space Group: P 41 21 2
R_factor 0.249 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.457 88.457 235.625 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.12 Å
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Src-like inactive conformation in the abl tyrosine kinase domain., Levinson NM, Kuchment O, Shen K, Young MA, Koldobskiy M, Karplus M, Cole PA, Kuriyan J, PLoS Biol. 2006 May;4(5):e144. Epub 2006 May 2. PMID:16640460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2g2i.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2g2i.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (2g2i.pdb3.gz) 180 Kb
  • Biological Unit Coordinates (2g2i.pdb4.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 2G2I
  • CSU: Contacts of Structural Units for 2G2I
  • Likely Quarternary Molecular Structure file(s) for 2G2I
  • Structure Factors (146 Kb)
  • Retrieve 2G2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G2I from S2C, [Save to disk]
  • Re-refined 2g2i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G2I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G2I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g2i_C] [2g2i] [2g2i_A] [2g2i_D] [2g2i_B]
  • SWISS-PROT database: [P00519]
  • Domain organization of [ABL1_HUMAN] by SWISSPFAM
  • Domain found in 2G2I: [TyrKc ] by SMART
  • Other resources with information on 2G2I
  • Community annotation for 2G2I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science